API

Import MultiVelo as:

import multivelo as mv

Preprocessing

aggregate_peaks_10x(adata_atac, ...[, ...])	Peak to gene aggregation.
tfidf_norm(adata_atac[, scale_factor, copy])	TF-IDF normalization.
knn_smooth_chrom(adata_atac[, nn_idx, ...])	KNN smoothing.
calculate_qc_metrics(adata, **kwargs)	Basic QC metrics.

Tools

recover_dynamics_chrom(adata_rna[, ...])	Multi-omic dynamics recovery.
velocity_chrom(adata_rna[, adata_atac, ...])	Multi-omic steady-state model.
set_velocity_genes(adata[, ...])	Reset velocity genes.
velocity_graph(adata[, vkey, xkey])	Computes velocity graph.
velocity_embedding_stream(adata[, vkey, show])	Plots velocity stream.
latent_time(adata[, vkey])	Computes latent time.
LRT_decoupling(adata_rna, adata_atac, **kwargs)	Computes likelihood ratio test for decoupling state.

Plotting

likelihood_plot(adata[, genes, figsize, ...])	Likelihood plots.
pie_summary(adata[, genes])	Summary of directions and models.
switch_time_summary(adata[, genes])	Summary of switch times.
dynamic_plot(adata, genes[, by, color_by, ...])	Gene dynamics plot.
scatter_plot(adata, genes[, by, color_by, ...])	Gene scatter plot.