multivelo.velocity_graph

multivelo.velocity_graph(adata, vkey='velo_s', xkey='Ms', **kwargs)

Computes velocity graph.

This function normalizes the velocity matrix and computes velocity graph with scvelo.tl.velocity_graph.

Parameters:

• adata (AnnData) – Anndata result from dynamics recovery.

• vkey (str (default: velo_s)) – Default to use spliced velocities.

• xkey (str (default: Ms)) – Default to use smoothed spliced counts.

• scvelo.tl.velocity_graph. (Additional parameters passed to) –

Returns:

• Normalized velocity matrix and associated velocity genes and params.

• Outputs of scvelo.tl.velocity_graph.